{ "_id": "6a13ea6cacfb0bcc41d2dfd0", "Package": "SemiCompRisks", "Type": "Package", "Title": "Hierarchical Models for Parametric and Semi-Parametric Analyses\nof Semi-Competing Risks Data", "Version": "3.4", "Date": "2021-2-2", "Author": "Kyu Ha Lee, Catherine Lee, Danilo Alvares, and Sebastien\nHaneuse", "Maintainer": "Kyu Ha Lee ", "Description": "Hierarchical multistate models are considered to perform\nthe analysis of independent/clustered semi-competing risks\ndata. The package allows to choose the specification for model\ncomponents from a range of options giving users substantial\nflexibility, including: accelerated failure time or\nproportional hazards regression models; parametric or\nnon-parametric specifications for baseline survival functions\nand cluster-specific random effects distribution; a Markov or\nsemi-Markov specification for terminal event following\nnon-terminal event. While estimation is mainly performed within\nthe Bayesian paradigm, the package also provides the maximum\nlikelihood estimation approach for several parametric models.\nThe package also includes functions for univariate survival\nanalysis as complementary analysis tools.", "License": "GPL (>= 2)", "VignetteBuilder": "R.rsp", "LazyLoad": "yes", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-25 06:14:59 UTC", "User": "root" }, "Repository": "https://kleest0.r-universe.dev", "Date/Publication": "2021-02-03 12:40:02 UTC", "RemoteUrl": "https://github.com/cran/SemiCompRisks", "RemoteRef": "HEAD", "RemoteSha": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "MD5sum": "d40ae04540dc33a049d0e307848e891f", "_user": "kleest0", "_type": "src", "_file": "SemiCompRisks_3.4.tar.gz", "_fileid": "323861f330e31a82dc49729d96e9688156619313c15af21f23a385c028f239c4", "_filesize": 1053351, "_sha256": "323861f330e31a82dc49729d96e9688156619313c15af21f23a385c028f239c4", "_created": "2026-05-25T06:14:59.000Z", "_published": "2026-05-25T06:21:32.082Z", "_distro": "noble", "_jobs": [ { "job": 77665634264, "time": 153, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7192729100" }, { "job": 77665634284, "time": 142, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7192726878" }, { "job": 77665634274, "time": 163, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7192730875" }, { "job": 77665634254, "time": 149, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7192728413" }, { "job": 77665634285, "time": 135, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7192726516" }, { "job": 77665634280, "time": 215, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7192740561" }, { "job": 77665634272, "time": 135, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7192726047" }, { "job": 77665634265, "time": 318, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7192761546" }, { "job": 77665306264, "time": 201, "config": "source", "r": "4.6.0", "check": "ERROR", "artifact": "7192699129" }, { "job": 77665634257, "time": 104, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7192719567" }, { "job": 77665634275, "time": 176, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7192733362" }, { "job": 77665634268, "time": 156, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7192729879" }, { "job": 77665634302, "time": 157, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7192729842" } ], "_buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752", "_status": "failure", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/SemiCompRisks", "_commit": { "id": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "author": "Kyu Ha Lee ", "committer": "cran-robot ", "message": "version 3.4\n", "time": 1612356002 }, "_maintainer": { "name": "Kyu Ha Lee", "email": "klee15239@gmail.com", "login": "kleest0", "description": "Assistant Professor", "uuid": 42443881 }, "_registered": true, "_dependencies": [ { "package": "MASS", "role": "Depends" }, { "package": "survival", "role": "Depends" }, { "package": "Formula", "role": "Depends" }, { "package": "R", "version": ">= 3.3.0", "role": "Depends" }, { "package": "R.rsp", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "kleest0", "count": 3, "uuid": 42443881 } ], "_userbio": { "uuid": 42443881, "type": "user", "name": "Kyuha Lee 이규하", "description": "Assistant Professor" }, "_downloads": { "count": 336, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SemiCompRisks" }, "_mentions": 1, "_searchresults": 27, "_topics": [ "gsl" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/SemiCompRisks.html", "manual.pdf" ], "_realowner": "kleest0", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2013-12-21" }, { "version": "2.0", "date": "2015-02-07" }, { "version": "2.2", "date": "2015-09-01" }, { "version": "2.3", "date": "2015-12-04" }, { "version": "2.4", "date": "2016-03-09" }, { "version": "2.5", "date": "2016-10-27" }, { "version": "2.6", "date": "2016-12-11" }, { "version": "2.7", "date": "2017-06-28" }, { "version": "2.8", "date": "2018-01-03" }, { "version": "3.0", "date": "2018-03-30" }, { "version": "3.1", "date": "2018-05-07" }, { "version": "3.2", "date": "2019-01-20" }, { "version": "3.3", "date": "2019-01-28" }, { "version": "3.4", "date": "2021-02-03" } ], "_exports": [ "BayesID", "BayesID_AFT", "BayesID_HReg", "BayesSurv", "BayesSurv_AFT", "BayesSurv_HReg", "FreqID", "FreqID_HReg", "FreqSurv", "FreqSurv_HReg", "initiate.startValues", "initiate.startValues_AFT", "initiate.startValues_HReg", "PPD", "simID", "simSurv" ], "_datasets": [ { "name": "BMT", "title": "Data on 137 Bone Marrow Transplant Patients", "object": "BMT", "file": "BMT.rda", "class": [ "data.frame" ], "fields": [ "g", "T1", "T2", "delta1", "delta2", "delta3", "TA", "deltaA", "TC", "deltaC", "TP", "deltaP", "Z1", "Z2", "Z3", "Z4", "Z5", "Z6", "Z7", "Z8", "Z9", "Z10" ], "rows": 137, "table": true, "tojson": true }, { "name": "CIBMTR", "title": "Center for International Blood and Bone Marrow Transplant Research (CIBMTR) data", "object": "CIBMTR", "file": "CIBMTR.rda", "class": [ "data.frame" ], "fields": [ "sexP", "ageP", "dType", "dStatus", "donorGrp" ], "rows": 9651, "table": true, "tojson": true }, { "name": "CIBMTR_Params", "title": "Estimates for model parameters from semi-competing risks analysis of the CIBMTR data using Weibull illness-death model.", "object": "CIBMTR_Params", "file": "CIBMTR_Params.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "scrData", "title": "A simulated clustered semi-competing risks data set", "object": "scrData", "file": "scrData.rda", "class": [ "data.frame" ], "fields": [ "time1", "event1", "time2", "event2", "cluster", "x1", "x2", "x3" ], "rows": 2000, "table": true, "tojson": true }, { "name": "survData", "title": "A simulated clustered univariate survival data.", "object": "survData", "file": "survData.rda", "class": [ "data.frame" ], "fields": [ "time", "event", "cluster", "cov1", "cov2" ], "rows": 5500, "table": true, "tojson": true } ], "_help": [ { "page": "SemiCompRisks-package", "title": "Algorithms for fitting parametric and semi-parametric models to semi-competing risks data / univariate survival data.", "topics": [ "SemiCompRisks-package", "SemiCompRisks" ] }, { "page": "BayesID_AFT", "title": "The function to implement Bayesian parametric and semi-parametric analyses for semi-competing risks data in the context of accelerated failure time (AFT) models.", "topics": [ "BayesID_AFT" ] }, { "page": "BayesID_HReg", "title": "The function to implement Bayesian parametric and semi-parametric analyses for semi-competing risks data in the context of hazard regression (HReg) models.", "topics": [ "BayesID_HReg" ] }, { "page": "BayesSurv_AFT", "title": "The function to implement Bayesian parametric and semi-parametric analyses for univariate survival data in the context of accelerated failure time (AFT) models.", "topics": [ "BayesSurv_AFT" ] }, { "page": "BayesSurv_HReg", "title": "The function to implement Bayesian parametric and semi-parametric regression analyses for univariate time-to-event data in the context of hazard regression (HReg) models.", "topics": [ "BayesSurv_HReg" ] }, { "page": "BMT", "title": "Data on 137 Bone Marrow Transplant Patients", "topics": [ "BMT" ] }, { "page": "CIBMTR", "title": "Center for International Blood and Bone Marrow Transplant Research (CIBMTR) data", "topics": [ "CIBMTR" ] }, { "page": "CIBMTR_Params", "title": "Estimates for model parameters from semi-competing risks analysis of the CIBMTR data using Weibull illness-death model.", "topics": [ "CIBMTR_Params" ] }, { "page": "FreqID_HReg", "title": "The function to fit parametric Weibull models for the frequentist anlaysis of semi-competing risks data.", "topics": [ "FreqID_HReg" ] }, { "page": "FreqSurv_HReg", "title": "The function to fit parametric Weibull models for the frequentist analysis of univariate survival data.", "topics": [ "FreqSurv_HReg" ] }, { "page": "initiate.startValues_AFT", "title": "The function that initiates starting values for a single chain.", "topics": [ "initiate.startValues_AFT" ] }, { "page": "initiate.startValues_HReg", "title": "The function that initiates starting values for a single chain.", "topics": [ "initiate.startValues_HReg" ] }, { "page": "methods", "title": "Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.", "topics": [ "coef.Bayes_AFT", "coef.Bayes_HReg", "coef.Freq_HReg", "plot.pred.Bayes_AFT", "plot.pred.Bayes_HReg", "plot.pred.Freq_HReg", "predict.Bayes_AFT", "predict.Bayes_HReg", "predict.Freq_HReg", "print.Bayes_AFT", "print.Bayes_HReg", "print.Freq_HReg", "print.summ.Bayes_AFT", "print.summ.Bayes_HReg", "print.summ.Freq_HReg", "summary.Bayes_AFT", "summary.Bayes_HReg", "summary.Freq_HReg", "vcov.Freq_HReg" ] }, { "page": "old.functions", "title": "Old functions", "topics": [ "BayesID", "BayesSurv", "FreqID", "FreqSurv", "initiate.startValues" ] }, { "page": "PPD", "title": "Function to predict the joint probability involving two event times in Bayesian illness-death models", "topics": [ "PPD" ] }, { "page": "scrData", "title": "A simulated clustered semi-competing risks data set", "topics": [ "scrData" ] }, { "page": "simID", "title": "The function that simulates independent/cluster-correlated semi-competing risks data under semi-Markov Weibull/Weibull-MVN models.", "topics": [ "simID" ] }, { "page": "simSurv", "title": "The function that simulates independent/cluster-correlated right-censored survival data under Weibull/Weibull-Normal model.", "topics": [ "simSurv" ] }, { "page": "survData", "title": "A simulated clustered univariate survival data.", "topics": [ "survData" ] } ], "_rundeps": [ "Formula", "lattice", "MASS", "Matrix", "survival" ], "_sysdeps": [ { "shlib": "libgsl", "package": "libgsl27", "headers": "libgsl-dev", "source": "gsl", "version": "2.7.1+dfsg-6ubuntu2", "name": "gsl", "homepage": "https://www.gnu.org/software/gsl", "description": "GNU Scientific Library (GSL) -- library package" } ], "_vignettes": [ { "source": "SemiCompRisks.ltx", "filename": "SemiCompRisks.pdf", "title": "This document presents a series of vignettes for the models available in SemiCompRisks package.", "engine": "R.rsp::tex", "headings": [], "created": "2016-10-27 11:09:03", "modified": "2019-01-20 21:30:04", "commits": 5 } ], "_score": 2.4313637641589874, "_indexed": true, "_nocasepkg": "semicomprisks", "_universes": [ "kleest0" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.4", "date": "2026-05-25T06:17:22.000Z", "distro": "noble", "arch": "aarch64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "9d64856b45e02db096eff21ec3f7e2462e0faf31f57bdc5227b9727e03ea939a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.7.0", "os": "linux", "version": "3.4", "date": "2026-05-25T06:17:15.000Z", "distro": "noble", "arch": "x86_64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "86c0f52428525ed1987d1cc0197a00b98104a262c982814867cf0c9b9e04a402", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.6.0", "os": "linux", "version": "3.4", "date": "2026-05-25T06:17:32.000Z", "distro": "noble", "arch": "aarch64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "42e1881f29597845673d499b42e41520000004b1cfd5d1e6910bb152efb920ae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.6.0", "os": "linux", "version": "3.4", "date": "2026-05-25T06:17:13.000Z", "distro": "noble", "arch": "x86_64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "aa4f791ab0ec845a16fec4e3293c43ead4834c4c6158bc4e8b1a1678588715b6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.5.3", "os": "mac", "version": "3.4", "date": "2026-05-25T06:17:24.000Z", "arch": "aarch64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "78ba2b10d1dde750ce593de9dda1c2d10d72c74ad203fd8deac8164e2ee0f418", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.5.3", "os": "mac", "version": "3.4", "date": "2026-05-25T06:18:02.000Z", "arch": "x86_64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "b601a299632f4b52e6cbb0925d61691f61e715317838c370b4c8803185dcba86", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.6.0", "os": "mac", "version": "3.4", "date": "2026-05-25T06:17:19.000Z", "arch": "aarch64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "03b1ac55adbf30ef30e9d21acf8a1b7a6aa0af198c5855a796246f95e2d990fc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.6.0", "os": "mac", "version": "3.4", "date": "2026-05-25T06:19:19.000Z", "arch": "x86_64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "06c77e302b0782f1a4e78376258002e0051f69d606144a74f262a1d39e0a3872", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.6.0", "os": "wasm", "version": "3.4", "date": "2026-05-25T06:17:20.000Z", "arch": "emscripten", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "e307593fca4a890862c2c078418c368a3951b5c136824836e72f471a8904a297", "status": "success", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.7.0", "os": "win", "version": "3.4", "date": "2026-05-25T06:16:50.000Z", "arch": "x86_64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "9d08521fb41539e0b690f6d0b123c0130737f6528a8c1963a1f68ce035738dc6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.5.3", "os": "win", "version": "3.4", "date": "2026-05-25T06:16:36.000Z", "arch": "x86_64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "78703fc5d9ad6395ef7e2c4ad400518abc86037ea0be855e7ce107510ca5e569", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" }, { "r": "4.6.0", "os": "win", "version": "3.4", "date": "2026-05-25T06:16:40.000Z", "arch": "x86_64", "commit": "75c1efe6a72b404cdad9c96d345e46c0fd15e77a", "fileid": "c7028c999d1a7b5a78c940012316a2d10902b8d458cc24b27b944b2164d8c9e7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kleest0/actions/runs/26386251752" } ] }